sort_coordinates_datatable: Sort coordinates: data.table

In RajLabMSSM/echotabix: echoverse module: automated creation and querying of tabix files

Sort coordinates: data.table

Description

Support function for sort_coordinates.

Usage

sort_coordinates_datatable(
  target_path,
  chrom_col,
  start_col,
  end_col = start_col,
  outputs = c("command", "path", "data"),
  skip = "__auto__",
  save_path = NULL,
  verbose = TRUE
)

Arguments

target_path	Path to full GWAS/QTL summary statistics file.
chrom_col	Name of the chromosome column in the target_path file.
start_col	Name of the genomic start position column in the target_path file.
end_col	Name of the genomic end position column in the target_path file.
outputs	"command"Text string of the command (without executing it.) "path"Path to the saved data file. "data"The resulting data in data.table format.
save_path	File to save the results to.
verbose	Print messages.

RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.