cellProximityVisPlot_3D_plotly: cellProximityVisPlot_3D_plotly

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

cellProximityVisPlot_3D_plotly

Description

Visualize 3D cell-cell interactions according to spatial coordinates in plotly mode

Usage

cellProximityVisPlot_3D_plotly(
  gobject,
  interaction_name = NULL,
  cluster_column = NULL,
  sdimx = NULL,
  sdimy = NULL,
  sdimz = NULL,
  cell_color = NULL,
  cell_color_code = NULL,
  color_as_factor = T,
  show_other_cells = F,
  show_network = F,
  show_other_network = F,
  network_color = NULL,
  spatial_network_name = "Delaunay_network",
  show_grid = F,
  grid_color = NULL,
  spatial_grid_name = "spatial_grid",
  show_legend = T,
  point_size_select = 2,
  point_size_other = 1,
  point_alpha_other = 0.5,
  axis_scale = c("cube", "real", "custom"),
  custom_ratio = NULL,
  x_ticks = NULL,
  y_ticks = NULL,
  z_ticks = NULL,
  ...
)

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.