clusterSpatialCorGenes: clusterSpatialCorGenes
In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox
clusterSpatialCorGenes R Documentation
clusterSpatialCorGenes
Description
Cluster based on spatially correlated genes
Usage
clusterSpatialCorGenes(
spatCorObject,
name = "spat_clus",
hclust_method = "ward.D",
k = 10,
return_obj = TRUE
)
Arguments
spatCorObject
spatial correlation object
name
name for spatial clustering results
hclust_method
method for hierarchical clustering
k
number of clusters to extract
return_obj
return spatial correlation object (spatCorObject)
Value
spatCorObject or cluster results
RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.
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| clusterSpatialCorGenes | R Documentation |
clusterSpatialCorGenes
Description
Cluster based on spatially correlated genes
Usage
clusterSpatialCorGenes(
spatCorObject,
name = "spat_clus",
hclust_method = "ward.D",
k = 10,
return_obj = TRUE
)
Arguments
spatCorObject |
spatial correlation object |
name |
name for spatial clustering results |
hclust_method |
method for hierarchical clustering |
k |
number of clusters to extract |
return_obj |
return spatial correlation object (spatCorObject) |
Value
spatCorObject or cluster results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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