createRegZStackGobject: createRegZStackGobject

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

createRegZStackGobject

Description

create registered z stacked 3D gobject. Images not supported

Usage

createRegZStackGobject(
  expression_list,
  spatlocs_list,
  xvals,
  yvals,
  scalefactor = 1,
  transformXML,
  z_vals,
  instructions = NULL
)

Arguments

expression_list	list of expression values to use
spatlocs_list	list of spatlocs to use
xvals	x value spatial input
yvals	y value spatial input
scalefactor	scale spatial coords to pixel coords
transformXML	transformation files to use
z_vals	z values to use in z stacking. In order of expression_list and spatloc_list.
instructions	instructions for Giotto processing

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.