decide_cluster_order: decide_cluster_order
In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

decide_cluster_order

R Documentation

decide_cluster_order

Description

creates order for clusters

Usage

decide_cluster_order(
  gobject,
  expression_values = c("normalized", "scaled", "custom"),
  genes,
  cluster_column = NULL,
  cluster_order = c("size", "correlation", "custom"),
  cluster_custom_order = NULL,
  cor_method = "pearson",
  hclust_method = "ward.D"
)

Arguments

`gobject`	giotto object
`expression_values`	expression values to use
`genes`	genes to use
`cluster_column`	name of column to use for clusters
`cluster_order`	method to determine cluster order
`cluster_custom_order`	custom order for clusters
`cor_method`	method for correlation
`hclust_method`	method for hierarchical clustering