dimCellPlot | R Documentation |
Visualize cells according to dimension reduction coordinates
dimCellPlot(gobject, ...)
gobject |
giotto object |
... |
Arguments passed on to
|
Description of parameters. For 3D plots see dimCellPlot2D
ggplot
Other dimension reduction cell annotation visualizations:
dimCellPlot2D()
data(mini_giotto_single_cell)
# combine all metadata
combineMetadata(mini_giotto_single_cell, spat_enr_names = 'cluster_metagene')
# visualize total expression information
dimCellPlot(mini_giotto_single_cell, cell_annotation_values = 'total_expr')
# visualize enrichment results
dimCellPlot(mini_giotto_single_cell,
spat_enr_names = 'cluster_metagene',
cell_annotation_values = c('1','2'))
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