do_permuttest_random: do_permuttest_random

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

do_permuttest_random

Description

calculate random values

Performs permutation test on subsets of a matrix

Usage

do_permuttest_random(
  expr_values,
  select_ind,
  other_ind,
  name = "perm_1",
  mean_method,
  offset = 0.1,
  set_seed = TRUE,
  seed_number = 1234
)

do_permuttest(
  expr_values,
  select_ind,
  other_ind,
  n_perm = 1000,
  adjust_method = "fdr",
  mean_method,
  offset = 0.1,
  cores = 2,
  set_seed = TRUE,
  seed_number = 1234
)

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.