do_spatial_grid_averaging: do_spatial_grid_averaging

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

do_spatial_grid_averaging

Description

smooth gene expression over a defined spatial grid

Usage

do_spatial_grid_averaging(
  gobject,
  expression_values = c("normalized", "scaled", "custom"),
  subset_genes = NULL,
  spatial_grid_name = "spatial_grid",
  min_cells_per_grid = 4
)

Arguments

gobject	giotto object
expression_values	gene expression values to use
subset_genes	subset of genes to use
spatial_grid_name	name of spatial grid to use
min_cells_per_grid	minimum number of cells to consider a grid

Value

matrix with smoothened gene expression values based on spatial grid

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.