filterGiotto | R Documentation |
filter Giotto object based on expression threshold
filterGiotto(
gobject,
expression_values = c("raw", "normalized", "scaled", "custom"),
expression_threshold = 1,
gene_det_in_min_cells = 100,
min_det_genes_per_cell = 100,
verbose = F
)
gobject |
giotto object |
expression_values |
expression values to use |
expression_threshold |
threshold to consider a gene expressed |
gene_det_in_min_cells |
minimum # of cells that need to express a gene |
min_det_genes_per_cell |
minimum # of genes that need to be detected in a cell |
verbose |
verbose |
The function filterCombinations
can be used to explore the effect of different parameter values.
giotto object
data(mini_giotto_single_cell)
filtered_gobject = filterGiotto(mini_giotto_single_cell,
gene_det_in_min_cells = 10,
min_det_genes_per_cell = 10)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.