get10Xmatrix_h5: get10Xmatrix_h5
In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox
get10Xmatrix_h5 R Documentation
get10Xmatrix_h5
Description
This function creates an expression matrix from a 10X h5 file path
Usage
get10Xmatrix_h5(path_to_data, gene_ids = c("symbols", "ensembl"))
Arguments
path_to_data
path to the 10X .h5 file
gene_ids
use gene symbols (default) or ensembl ids for the gene expression matrix
Details
If the .h5 10x file has multiple modalities (e.g. RNA and protein),
multiple matrices will be returned
Value
(list of) sparse expression matrix from 10X
RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.
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| get10Xmatrix_h5 | R Documentation |
get10Xmatrix_h5
Description
This function creates an expression matrix from a 10X h5 file path
Usage
get10Xmatrix_h5(path_to_data, gene_ids = c("symbols", "ensembl"))
Arguments
path_to_data |
path to the 10X .h5 file |
gene_ids |
use gene symbols (default) or ensembl ids for the gene expression matrix |
Details
If the .h5 10x file has multiple modalities (e.g. RNA and protein), multiple matrices will be returned
Value
(list of) sparse expression matrix from 10X
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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