getSpatialDataset | R Documentation |
This package will automatically download the spatial locations and expression matrix for the chosen dataset. These files are already in the right format to create a Giotto object. If wget is installed on your machine, you can add 'method = wget' to the parameters to download files faster.
getSpatialDataset(
dataset = c("ST_OB1", "ST_OB2", "codex_spleen", "cycif_PDAC", "starmap_3D_cortex",
"osmfish_SS_cortex", "merfish_preoptic", "seqfish_SS_cortex", "seqfish_OB",
"slideseq_cerebellum", "ST_SCC"),
directory = getwd(),
verbose = TRUE,
...
)
dataset |
dataset to download |
directory |
directory to save the data to |
verbose |
be verbose |
... |
additional parameters to |
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