makeSignMatrixDWLSfromMatrix: makeSignMatrixDWLSfromMatrix
In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox
View source: R/spatial_enrichment.R
makeSignMatrixDWLSfromMatrix R Documentation
makeSignMatrixDWLSfromMatrix
Description
Function to convert a single-cell RNAseq matrix into a format
that can be used with runDWLSDeconv.
Usage
makeSignMatrixDWLSfromMatrix(matrix, sign_gene, cell_type_vector)
Arguments
matrix
scRNA-seq matrix
sign_gene
genes to use (e.g. marker genes)
cell_type_vector
vector with cell types (length = ncol(matrix))
Value
matrix
See Also
runDWLSDeconv
RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.
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View source: R/spatial_enrichment.R
| makeSignMatrixDWLSfromMatrix | R Documentation |
makeSignMatrixDWLSfromMatrix
Description
Function to convert a single-cell RNAseq matrix into a format
that can be used with runDWLSDeconv.
Usage
makeSignMatrixDWLSfromMatrix(matrix, sign_gene, cell_type_vector)
Arguments
matrix |
scRNA-seq matrix |
sign_gene |
genes to use (e.g. marker genes) |
cell_type_vector |
vector with cell types (length = ncol(matrix)) |
Value
matrix
See Also
runDWLSDeconv
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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