makeSignMatrixRank: makeSignMatrixRank

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

makeSignMatrixRank

Description

Function to convert a single-cell count matrix and a corresponding single-cell cluster vector into a rank matrix that can be used with the Rank enrichment option.

Usage

makeSignMatrixRank(
  sc_matrix,
  sc_cluster_ids,
  ties_method = c("random", "max"),
  gobject = NULL
)

Arguments

sc_matrix	matrix of single-cell RNAseq expression data
sc_cluster_ids	vector of cluster ids
ties_method	how to handle rank ties
gobject	if giotto object is given then only genes present in both datasets will be considered

Value

matrix

See Also

rankEnrich

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.