plotCombineCPG: plotCombineCPG

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

plotCombineCPG

Description

Create visualization for combined (pairwise) ICG scores

Usage

plotCombineCPG(...)

Arguments

...

Arguments passed on to plotCombineICG gobject giotto object combCpgObject ICGscores, output from combineInteractionChangedGenes() selected_interactions interactions to show selected_gene_to_gene pairwise gene combinations to show detail_plot show detailed info in both interacting cell types simple_plot show a simplified plot simple_plot_facet facet on interactions or genes with simple plot facet_scales ggplot facet scales paramter facet_ncol ggplot facet ncol parameter facet_nrow ggplot facet nrow parameter colors vector with two colors to use show_plot show plots return_plot return plotting object save_plot directly save the plot [boolean] save_param list of saving parameters from all_plots_save_function default_save_name default save name for saving, don't change, change save_name in save_param

See Also

plotCombineICG

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.