View source: R/spatial_interaction_visuals.R
plotCombineCellCellCommunication | R Documentation |
Create visualization for combined (pairwise) cell proximity gene scores
plotCombineCellCellCommunication(
gobject,
combCCcom,
selected_LR = NULL,
selected_cell_LR = NULL,
detail_plot = T,
simple_plot = F,
simple_plot_facet = c("interaction", "genes"),
facet_scales = "fixed",
facet_ncol = length(selected_LR),
facet_nrow = length(selected_cell_LR),
colors = c("#9932CC", "#FF8C00"),
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "plotCombineCellCellCommunication"
)
gobject |
giotto object |
combCCcom |
combined communcation scores, output from combCCcom() |
selected_LR |
selected ligand-receptor pair |
selected_cell_LR |
selected cell-cell interaction pair for ligand-receptor pair |
detail_plot |
show detailed info in both interacting cell types |
simple_plot |
show a simplified plot |
simple_plot_facet |
facet on interactions or genes with simple plot |
facet_scales |
ggplot facet scales paramter |
facet_ncol |
ggplot facet ncol parameter |
facet_nrow |
ggplot facet nrow parameter |
colors |
vector with two colors to use |
show_plot |
show plots |
return_plot |
return plotting object |
save_plot |
directly save the plot [boolean] |
save_param |
list of saving parameters from |
default_save_name |
default save name for saving, don't change, change save_name in save_param |
ggplot
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