View source: R/spatial_interaction_visuals.R
plotICG | R Documentation |
Create barplot to visualize interaction changed genes
plotICG(
gobject,
cpgObject,
source_type,
source_markers,
ICG_genes,
cell_color_code = NULL,
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "plotICG"
)
gobject |
giotto object |
cpgObject |
ICG (interaction changed gene) score object |
source_type |
cell type of the source cell |
source_markers |
markers for the source cell type |
ICG_genes |
named character vector of ICG genes |
cell_color_code |
cell color code for the interacting cell types |
show_plot |
show plots |
return_plot |
return plotting object |
save_plot |
directly save the plot [boolean] |
save_param |
list of saving parameters from |
default_save_name |
default save name for saving, don't change, change save_name in save_param |
plot
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