plotPCA | R Documentation |
Short wrapper for PCA visualization
plotPCA(gobject, dim_reduction_name = "pca", default_save_name = "PCA", ...)
gobject |
giotto object |
dim_reduction_name |
name of PCA |
default_save_name |
default save name of PCA plot |
... |
Arguments passed on to
|
Description of parameters, see dimPlot2D
. For 3D plots see plotPCA_3D
ggplot
Other reduced dimension visualizations:
dimPlot2D()
,
dimPlot3D()
,
dimPlot()
,
plotPCA_2D()
,
plotPCA_3D()
,
plotTSNE_2D()
,
plotTSNE_3D()
,
plotTSNE()
,
plotUMAP_2D()
,
plotUMAP_3D()
,
plotUMAP()
data(mini_giotto_single_cell)
plotPCA(mini_giotto_single_cell)
plotPCA(mini_giotto_single_cell, cell_color = 'cell_types', point_size = 3)
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