View source: R/spatial_interaction_visuals.R
plotRecovery | R Documentation |
Plots recovery plot to compare ligand-receptor rankings from spatial and expression information
plotRecovery(
gobject,
combCC,
expr_rnk_column = "exprPI_rnk",
spat_rnk_column = "spatPI_rnk",
ground_truth = c("spatial", "expression"),
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "plotRecovery"
)
gobject |
giotto object |
combCC |
combined communinication scores from |
expr_rnk_column |
column with expression rank information to use |
spat_rnk_column |
column with spatial rank information to use |
ground_truth |
what to consider as ground truth (default: spatial) |
show_plot |
show plots |
return_plot |
return plotting object |
save_plot |
directly save the plot [boolean] |
save_param |
list of saving parameters from |
default_save_name |
default save name for saving, don't change, change save_name in save_param |
ggplot
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