rankSpatialCorGroups | R Documentation |
Rank spatial correlated clusters according to correlation structure
rankSpatialCorGroups(
gobject,
spatCorObject,
use_clus_name = NULL,
show_plot = NA,
return_plot = FALSE,
save_plot = NA,
save_param = list(),
default_save_name = "rankSpatialCorGroups"
)
gobject |
giotto object |
spatCorObject |
spatial correlation object |
use_clus_name |
name of clusters to visualize (from clusterSpatialCorGenes()) |
show_plot |
show plot |
return_plot |
return ggplot object |
save_plot |
directly save the plot [boolean] |
save_param |
list of saving parameters, see |
default_save_name |
default save name for saving, don't change, change save_name in save_param |
data.table with positive (within group) and negative (outside group) scores
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