runPCA_prcomp_irlba: runPCA_prcomp_irlba

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

runPCA_prcomp_irlba

Description

performs PCA based on the irlba package

Usage

runPCA_prcomp_irlba(
  x,
  ncp = 100,
  center = TRUE,
  scale = TRUE,
  rev = FALSE,
  set_seed = TRUE,
  seed_number = 1234,
  ...
)

Arguments

x	matrix or object that can be converted to matrix
ncp	number of principal components to calculate
center	center data
scale	scale features
rev	reverse PCA
set_seed	use of seed
seed_number	seed number to use

Value

list of eigenvalues, loadings and pca coordinates

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.