selectPatternGenes | R Documentation |
Select genes correlated with spatial patterns
selectPatternGenes(
spatPatObj,
dimensions = 1:5,
top_pos_genes = 10,
top_neg_genes = 10,
min_pos_cor = 0.5,
min_neg_cor = -0.5,
return_top_selection = FALSE
)
spatPatObj |
Output from detectSpatialPatterns |
dimensions |
dimensions to identify correlated genes for. |
top_pos_genes |
Top positively correlated genes. |
top_neg_genes |
Top negatively correlated genes. |
min_pos_cor |
Minimum positive correlation score to include a gene. |
min_neg_cor |
Minimum negative correlation score to include a gene. |
return_top_selection |
only return selection based on correlation criteria (boolean) |
Description.
Data.table with genes associated with selected dimension (PC).
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.