showPattern3D | R Documentation |
show patterns for 3D spatial data
showPattern3D(
gobject,
spatPatObj,
dimension = 1,
trim = c(0.02, 0.98),
background_color = "white",
grid_border_color = "grey",
show_legend = T,
point_size = 1,
axis_scale = c("cube", "real", "custom"),
custom_ratio = NULL,
x_ticks = NULL,
y_ticks = NULL,
z_ticks = NULL,
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "showPattern3D"
)
gobject |
giotto object |
spatPatObj |
Output from detectSpatialPatterns |
dimension |
dimension to plot |
trim |
Trim ends of the PC values. |
background_color |
background color for plot |
grid_border_color |
color for grid |
show_legend |
show legend of plot |
point_size |
adjust the point size |
axis_scale |
scale the axis |
custom_ratio |
cutomize the scale of the axis |
x_ticks |
the tick number of x_axis |
y_ticks |
the tick number of y_axis |
z_ticks |
the tick number of z_axis |
show_plot |
show plot |
return_plot |
return plot object |
save_plot |
directly save the plot [boolean] |
save_param |
list of saving parameters, see |
default_save_name |
default save name for saving, don't change, change save_name in save_param |
plotly
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