showPatternGenes | R Documentation |
show genes correlated with spatial patterns
showPatternGenes(
gobject,
spatPatObj,
dimension = 1,
top_pos_genes = 5,
top_neg_genes = 5,
point_size = 1,
return_DT = FALSE,
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "showPatternGenes"
)
gobject |
giotto object |
spatPatObj |
Output from detectSpatialPatterns |
dimension |
dimension to plot genes for. |
top_pos_genes |
Top positively correlated genes. |
top_neg_genes |
Top negatively correlated genes. |
point_size |
size of points |
return_DT |
if TRUE, it will return the data.table used to generate the plots |
show_plot |
show plot |
return_plot |
return ggplot object |
save_plot |
directly save the plot [boolean] |
save_param |
list of saving parameters, see |
default_save_name |
default save name for saving, don't change, change save_name in save_param |
ggplot
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