spatDeconvPlot | R Documentation |
Visualize cell type enrichment / deconvolution results in a scatterpie
spatDeconvPlot(
gobject,
feat_type = NULL,
deconv_name = "DWLS",
show_image = F,
gimage = NULL,
image_name = "image",
spat_loc_name = NULL,
sdimx = "sdimx",
sdimy = "sdimy",
cell_color_code = NULL,
line_color = NA,
radius = 10,
alpha = 1,
legend_text = 8,
background_color = "white",
title = NULL,
axis_text = 8,
axis_title = 8,
coord_fix_ratio = TRUE,
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "spatDeconvPlot"
)
gobject |
giotto object |
deconv_name |
name of deconvolution results to use |
show_image |
show a tissue background image |
gimage |
a giotto image |
image_name |
name of a giotto image |
sdimx |
x-axis dimension name (default = 'sdimx') |
sdimy |
y-axis dimension name (default = 'sdimy') |
cell_color_code |
named vector with colors |
line_color |
color of line within pie charts |
radius |
radios of pie charts |
alpha |
alpha of pie charts |
legend_text |
size of legend text |
background_color |
color of plot background |
title |
title for plot (default = deconv_name) |
axis_text |
size of axis text |
axis_title |
size of axis title |
coord_fix_ratio |
fix ratio between x and y-axis |
show_plot |
show plot |
return_plot |
return ggplot object |
save_plot |
directly save the plot [boolean] |
save_param |
list of saving parameters from |
default_save_name |
default save name for saving, don't change, change save_name in save_param |
Description of parameters.
ggplot
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