spatialAEH: spatialAEH

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

spatialAEH

Description

Compute spatial variable genes with spatialDE method

Usage

spatialAEH(
  gobject = NULL,
  SpatialDE_results = NULL,
  name_pattern = "AEH_patterns",
  expression_values = c("raw", "normalized", "scaled", "custom"),
  pattern_num = 6,
  l = 1.05,
  python_path = NULL,
  return_gobject = TRUE
)

Arguments

gobject	Giotto object
SpatialDE_results	results of spatialDE function
name_pattern	name for the computed spatial patterns
expression_values	gene expression values to use
pattern_num	number of spatial patterns to look for
l	lengthscale
python_path	specify specific path to python if required
return_gobject	show plot

Details

This function is a wrapper for the SpatialAEH method implemented in the ...

Value

An updated giotto object

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.