trendSceek: trendSceek

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

trendSceek

Description

Compute spatial variable genes with trendsceek method

Usage

trendSceek(
  gobject,
  expression_values = c("normalized", "raw"),
  subset_genes = NULL,
  nrand = 100,
  ncores = 8,
  ...
)

Arguments

gobject	Giotto object
expression_values	gene expression values to use
subset_genes	subset of genes to run trendsceek on
nrand	An integer specifying the number of random resamplings of the mark distribution as to create the null-distribution.
ncores	An integer specifying the number of cores to be used by BiocParallel
...	Additional parameters to the trendsceek_test function

Details

This function is a wrapper for the trendsceek_test method implemented in the trendsceek package

Value

data.frame with trendsceek spatial genes results

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.