write_giotto_viewer_dim_reduction: write_giotto_viewer_dim_reduction

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

write_giotto_viewer_dim_reduction

Description

write out dimensional reduction data from a giotto object for the Viewer

Usage

write_giotto_viewer_dim_reduction(
  dim_reduction_cell,
  dim_red = NULL,
  dim_red_name = NULL,
  dim_red_rounding = NULL,
  dim_red_rescale = c(-20, 20),
  output_directory = getwd()
)

Arguments

dim_reduction_cell	dimension reduction slot from giotto object
dim_red	high level name of dimension reduction
dim_red_name	specific name of dimension reduction to use
dim_red_rounding	numerical indicating how to round the coordinates
dim_red_rescale	numericals to rescale the coordinates
output_directory	directory where to save the files

Value

write a .txt and .annot file for the selection annotation

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.