API for SystemsGenetics/KINC.R
Provides additional functions for network files created using KINC.
| Global functions | |
|---|---|
| KINCtoIgraph | Source code |
| RMT | Man page Source code |
| analyzeEdgeCat | Man page Source code |
| analyzeEdgeDiffQuant | Source code |
| analyzeEdgeQuant | Man page Source code |
| analyzeNetCat | Man page Source code |
| analyzeNetDiffQuant | Source code |
| analyzeNetQuant | Man page Source code |
| applyDynamicPowerThreshold | Source code |
| clusterEdges | Man page Source code |
| countEmatrixModes | Source code |
| drawEdgeListHeatMap | Man page Source code |
| drawEdgeTreeHeatMap | Man page Source code |
| filterBiasedEdges | Source code |
| filterInsignficantEdges | Source code |
| filterNetFDR | Source code |
| findLinkedCommunities | Man page Source code |
| getEdgeExpressionMatrix | Source code |
| getEdgeRanks | Source code |
| getEdgeSamples | Man page Source code |
| getMissingEdgeSamples | Source code |
| getNNSDPaceChiSquare | Source code |
| getNonEdgeSamples | Source code |
| getPairGMMEdges | Man page Source code |
| getRanks | Source code |
| getSSLinkModules | Source code |
| getSampleDistance | Source code |
| getSampleMatrix | Man page Source code |
| getSampleStringArray | Source code |
| graphEdgeList | Man page Source code |
| graphNet | Man page Source code |
| highlightEdgeList | Man page Source code |
| loadGEM | Source code |
| loadKINCNetwork | Source code |
| loadSampleAnnotations | Man page |
| mergeClusters | Man page Source code |
| mergeCommunities | Man page Source code |
| performBiasTests | Source code |
| performClusterBinomialTest | Source code |
| performClusterFishersTest | Source code |
| performEdgeDiff | Source code |
| performHotellingTest | Source code |
| plot2DEdgeList | Man page Source code |
| plot2DEdgeReport | Source code |
| plot2DPair | Source code |
| plot2DPairReport | Source code |
| plot3DEdgeList | Man page Source code |
| plot3DPair | Man page Source code |
| plotEdgeCountPerCondition | Source code |
| plotGene | Source code |
| plotPvalHistPerCondition | Source code |
| plotPvalPerCondition | Source code |
| plotPvalPerScore | Source code |
| plotPvalPerScoreAndCondition | Source code |
| plotRsqrHistPerCondition | Source code |
| plotRsqrPerCondition | Source code |
| plotRsqrPerScore | Source code |
| plotRsqrPerScoreAndCondition | Source code |
| saveConditionKINCNetwork | Source code |
| saveKINCNetwork | Source code |
| saveKINCplots | Source code |
