Files in UPSCb/RnaSeqTutorial
RNA-Seq Tutorial
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/RnaSeqTutorial-package.R
R/densityPlot.R
R/extdata.R
R/functionalGenomics.R
R/gcFunction.R
R/plot.multidensity.R
R/plotMA.R
R/plotMALSD.R
R/volcanoPlot.R
README.md
build/vignette.rds
external_data_store.txt
inst/CITATION
inst/doc/Chapters/01-Convention.html
inst/doc/Chapters/02-Introduction.html
inst/doc/Chapters/04-Preprocessing.html
inst/doc/RnaSeqTutorial.html
inst/doc/scripts/RnaSeqTutorial.R
man/Ptrichocarpa_v3.0_210_synthetic_transcripts.Rd
man/RnaSeqTutorial-densityPlot.Rd
man/RnaSeqTutorial-deprecated.Rd
man/RnaSeqTutorial-extdata.Rd
man/RnaSeqTutorial-functionalGenomics.Rd
man/RnaSeqTutorial-gcFunction.Rd
man/RnaSeqTutorial-heatscatter.Rd
man/RnaSeqTutorial-package.Rd
man/RnaSeqTutorial-plotMA.Rd
man/RnaSeqTutorial-plotmultidensity.Rd
man/RnaSeqTutorial-volcanoPlot.Rd
man/RnaSeqTutorial.Rd
man/gAnnot.Rd
src/python/parseRnw.py
vignettes/Bibliography/References.bib
vignettes/Chapters/01-Convention.Rmd
vignettes/Chapters/02-Introduction.Rmd
vignettes/Chapters/04-Preprocessing.Rmd
vignettes/Chapters/05-Pseudo-Alignment.Rmd
vignettes/Chapters/12-R-Biological-QA.Rmd
vignettes/Commons/13-Solution.Rmd
vignettes/Commons/14-Acknowledgments.Rmd
vignettes/Commons/15-Footnotes.Rmd
vignettes/Commons/16-Images.Rmd
vignettes/Commons/17-SessionInfo.Rmd
vignettes/Commons/18-Appendix.Rmd
vignettes/Freeze/03-R-Introduction.Rmd
vignettes/Freeze/04-R-Annotations-Full-Version.Rmd
vignettes/Freeze/05-Alignment.Rmd
vignettes/Freeze/06-Prelude.Rmd
vignettes/Freeze/07-Linux-Alignments.Rmd
vignettes/Freeze/07-R-Alignments.Rmd
vignettes/Freeze/08-Linux-R-Annotations.Rmd
vignettes/Freeze/08-Visualisation.Rmd
vignettes/Freeze/09-R-Interlude.Rmd
vignettes/Freeze/10-Counting.Rmd
vignettes/Freeze/11-R-Counts.Rmd
vignettes/Freeze/13-R-Differential-Expression.Rmd
vignettes/Freeze/14-R-Biological-QA-FG.Rmd
vignettes/Freeze/15-R-Differential-Expression-FG.Rmd
vignettes/Freeze/16-R-DE-practical.Rmd
vignettes/Freeze/17-ShortReads.Rmd
vignettes/Freeze/18-Reproducing-at-Home.Rmd
vignettes/Freeze/Day2-1-Alignments.Rmd
vignettes/Freeze/Day2-6-Variants.Rmd
vignettes/Freeze/Day2-7-Differential-expression.Rmd
vignettes/Freeze/Dexseq.jpg
vignettes/Freeze/RPKMformula.png
vignettes/Freeze/RSQ-plot.png
vignettes/Freeze/age_vs_mol-biol.png
vignettes/Freeze/databaseTypes.pdf
vignettes/Freeze/gc-read.png
vignettes/Freeze/lattice.png
vignettes/Freeze/ranges-ir-plot.png
vignettes/Freeze/ranges-reduce-ir-plot.png
vignettes/Freeze/ranges-shift-ir-plot.png
vignettes/Images/count-modes.png
vignettes/Images/databaseTypes.png
vignettes/Images/example.png
vignettes/Images/logo.png
vignettes/Images/pipeline.png
vignettes/Images/theory.png
vignettes/Makefile
vignettes/RnaSeqTutorial.Rnw
vignettes/Templates/ChapterTemplate.Rmd
vignettes/Templates/Tutorial.Rmd
vignettes/css/sock_style.css
vignettes/header.html
vignettes/js/chart.js
vignettes/js/cryptomd5.js
vignettes/js/index.js
vignettes/js/jquery.js
vignettes/js/sock_fun.js
vignettes/js/socketio.js
vignettes/questMaster.R
vignettes/scripts/printoutCleanup.pl
