Files in Vitek-Lab/MSstatsConvert
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

.Rbuildignore

.github/CONTRIBUTING.md .github/pull_request_template.md

.github/workflows/dry-run-build.yml

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

_pkgdown.yml

codecov.yml

docs/404.html

docs/CONTRIBUTING.html

docs/articles/index.html

docs/articles/msstats_data_format.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/MSstatsBalancedDesign.html

docs/reference/MSstatsClean.html

docs/reference/MSstatsConvert.html

docs/reference/MSstatsImport.html

docs/reference/MSstatsInputFiles.html

docs/reference/MSstatsLogsSettings.html

docs/reference/MSstatsMakeAnnotation.html

docs/reference/MSstatsPreprocess.html

docs/reference/MSstatsSaveSessionInfo.html

docs/reference/dot-MSstatsFormat.html

docs/reference/dot-addFractions.html

docs/reference/dot-adjustIntensities.html

docs/reference/dot-aggregatePSMstoPeptideIons.html

docs/reference/dot-checkAnnotation.html

docs/reference/dot-checkDDA.html

docs/reference/dot-checkDuplicatedMeasurements.html

docs/reference/dot-checkMSstatsParams.html

docs/reference/dot-checkMultiRun.html

docs/reference/dot-checkOverlappedFeatures.html

docs/reference/dot-cleanByFeature.html

docs/reference/dot-cleanRawDIAUmpire.html

docs/reference/dot-cleanRawMaxQuant.html

docs/reference/dot-cleanRawOpenMS.html

docs/reference/dot-cleanRawOpenSWATH.html

docs/reference/dot-cleanRawPD.html

docs/reference/dot-cleanRawPDMSstats.html

docs/reference/dot-cleanRawPDTMT.html

docs/reference/dot-cleanRawProgenesis.html

docs/reference/dot-cleanRawSkyline.html

docs/reference/dot-cleanRawSpectroMineTMT.html

docs/reference/dot-cleanRawSpectronaut.html

docs/reference/dot-countCommonFeatures.html

docs/reference/dot-fillValues.html

docs/reference/dot-filterByPattern.html

docs/reference/dot-filterByScore.html

docs/reference/dot-filterExact.html

docs/reference/dot-filterFewMeasurements.html

docs/reference/dot-filterManyColumns.html

docs/reference/dot-filterOverlapped.html

docs/reference/dot-findAvailable.html

docs/reference/dot-fixColumnTypes.html

docs/reference/dot-fixMissingValues.html

docs/reference/dot-getChannelColumns.html

docs/reference/dot-getCorrectFraction.html

docs/reference/dot-getDataTable.html

docs/reference/dot-getFullDesign.html

docs/reference/dot-getMissingRunsPerFeature.html

docs/reference/dot-getOverlappingFeatures.html

docs/reference/dot-handleFiltering.html

docs/reference/dot-handleFractions.html

docs/reference/dot-handleFractionsLF.html

docs/reference/dot-handleFractionsTMT.html

docs/reference/dot-handleIsotopicPeaks.html

docs/reference/dot-handleSharedPeptides.html

docs/reference/dot-handleSingleFeaturePerProtein.html

docs/reference/dot-logConverterOptions.html

docs/reference/dot-logSuccess.html

docs/reference/dot-makeBalancedDesign.html

docs/reference/dot-makeExactFilterMessage.html

docs/reference/dot-makeScoreFilterMessage.html

docs/reference/dot-mergeAnnotation.html

docs/reference/dot-nullAppender.html

docs/reference/dot-onLoad.html

docs/reference/dot-removeOverlappingFeatures.html

docs/reference/dot-removeSharedPeptides.html

docs/reference/dot-selectMSstatsColumns.html

docs/reference/dot-standardizeColnames.html

docs/reference/dot-summarizeMultipleMeasurements.html

docs/reference/dot-summarizeMultiplePSMs.html

docs/reference/getDataType.html

docs/reference/getInputFile.html

docs/reference/index.html

docs/reference/new_log.log

docs/reference/session_info.txt

inst/tinytest/get_dt_test.csv

inst/tinytest/processed_data/DIANN/MSstatsDIANNFilesObject.rds

inst/tinytest/processed_data/Metamorpheus/MSstatsMetamorpheusFilesObject.rds

inst/tinytest/processed_data/PD/MSstatsProteomeDiscovererFilesObjectTMT.rds

inst/tinytest/processed_data/PD/MSstatsProteomeDiscovererFilesObjectTMT3-1Format.rds

inst/tinytest/processed_data/PD/MSstatsProteomeDiscovererFilesObjectTMTBadInput.rds

inst/tinytest/processed_data/ProtProspector/MSstatsProtProspectorFilesObjectTMT.rds

inst/tinytest/raw_data/DIANN/annotation.csv

inst/tinytest/raw_data/DIANN/diann_input.tsv

inst/tinytest/raw_data/DIAUmpire/annot_diau.csv

inst/tinytest/raw_data/DIAUmpire/dia_frag.csv

inst/tinytest/raw_data/DIAUmpire/dia_pept.csv

inst/tinytest/raw_data/DIAUmpire/dia_prot.csv

inst/tinytest/raw_data/FragPipe/fragpipe_input.csv

inst/tinytest/raw_data/MaxQuant/annotation.csv

inst/tinytest/raw_data/MaxQuant/mq_ev.csv

inst/tinytest/raw_data/MaxQuant/mq_pg.csv

inst/tinytest/raw_data/MaxQuantTMT/mq_ev.csv

inst/tinytest/raw_data/MaxQuantTMT/mq_pg.csv

inst/tinytest/raw_data/Metamorpheus/AllQuantifiedPeaks.tsv

inst/tinytest/raw_data/Metamorpheus/Annotation.tsv

inst/tinytest/raw_data/OpenMS/openms_input.csv

inst/tinytest/raw_data/OpenMSTMT/openmstmt_input.csv

inst/tinytest/raw_data/OpenSWATH/annot_os.csv

inst/tinytest/raw_data/OpenSWATH/openswath_input.csv

inst/tinytest/raw_data/PD/annot_pd.csv

inst/tinytest/raw_data/PD/pd_input.csv

inst/tinytest/raw_data/PDTMT/pdtmt_input.csv

inst/tinytest/raw_data/Progenesis/progenesis_annot.csv

inst/tinytest/raw_data/Progenesis/progenesis_input.csv

inst/tinytest/raw_data/ProteinProspector/Annotation.csv

inst/tinytest/raw_data/ProteinProspector/Prospector_TotalTMT.txt

inst/tinytest/raw_data/Skyline/skyline_input.csv

inst/tinytest/raw_data/SpectroMine/spectromine_input.csv

inst/tinytest/raw_data/Spectronaut/spectronaut_input.csv

inst/tinytest/raw_data/unbalanced_data.csv

vignettes/.gitignore

vignettes/msstats_data_format.Rmd

Vitek-Lab/MSstatsConvert documentation built on Nov. 21, 2024, 12:23 p.m.

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Vitek-Lab/MSstatsConvert
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Files in Vitek-Lab/MSstatsConvert
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

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Vitek-Lab/MSstatsConvert Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Files in Vitek-Lab/MSstatsConvert Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

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Vitek-Lab/MSstatsConvert
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Files in Vitek-Lab/MSstatsConvert
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format