gg_DimPlot: Reimplementation of DimPlot in Seurat for better graphic...

In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Description

Reimplementation of DimPlot in Seurat for better graphic controls

Usage

gg_DimPlot(
  x,
  feature,
  DR = "pca",
  dims = c(1, 2),
  size_highlight = NULL,
  highlight_ratio = 1.5,
  label_col = NULL,
  further_repel = T,
  repel_force = 1,
  reverse_x = F,
  reverse_y = F,
  assay = "RNA",
  slot_data = "data",
  AP = NULL,
  seg_color = NA,
  plot_type = "dim_red",
  ...
)

Arguments

x	a Seurat object
size_highlight	a character, logical or numeric vector specifying which cells to magnify in size
highlight_ratio	how much larger the highlighted cells should be
label_col	which column contains the label information
further_repel	if TRUE, the labels would be repelled away from the data points as much as possible
reverse_x	reverse x axis direction. This is because sometimes most of the contents are on the left, which would obstruct the arrow axis.
reverse_y	similarly reverse y axis direction.
AP	a list for custom_color and theme_TB

Author(s)

Yutong Chen

Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.