pathway_heat_pca: Save the PCA and heatmap of genes in a pathway
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
The results will be stored in a pdf file. For each pathway, a
PC plot using the genes in that pathway is shown, followed by expression of
genes in that pathway in heatmap format.
Usage
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pathway_heat_pca(
x,
gene_list,
save_dir,
cutoff = 70,
highlight_cells = NULL,
group.by = c("revised", "date"),
DE_dir = NULL,
DE_label = NULL
)
Arguments
cutoff
If the gene_list argument is longer than a cutoff length,
then the gene_list will be truncated into lists of genes, each of which is
no longer than the cutoff length. Then each heatmap will be generated for
each sublist
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description
The results will be stored in a pdf file. For each pathway, a PC plot using the genes in that pathway is shown, followed by expression of genes in that pathway in heatmap format.
Usage
1 2 3 4 5 6 7 8 9 10 | pathway_heat_pca(
x,
gene_list,
save_dir,
cutoff = 70,
highlight_cells = NULL,
group.by = c("revised", "date"),
DE_dir = NULL,
DE_label = NULL
)
|
Arguments
cutoff |
If the |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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