plot_gene_PC: Plot the contribution of genes to each PCs

In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Description

Plot the contribution of genes to each PCs

Usage

plot_gene_PC(
  x,
  group.by = NULL,
  show_markers = NULL,
  dims = c(1, 2),
  directory = NULL,
  label = "all",
  DR = "pca",
  color_markers = NULL,
  DE_rank = "logFC",
  cluster_col = "cluster",
  feature_col = "feature",
  AP = NULL
)

Arguments

x	a Seurat object
group.by	which feature of genes to color, default is the cell type in which the genes are differentially expressed
show_markers	the genes to shown in the final plot. If NULL, all genes will be shown. If TF, a list of transcriptional factors will be shown. Alternatively, the argument accepts a vector of genes.
dims	which pcs to plot
directory	where the DE gene results are stored. If NULL, the cells will not be coloured.
label	the label of the DE gene data
cluster_col	which column in the DE gene result that stores the cluster names
feature_col	which column in the DE gene result that stores the gene names
AP	aesthetic parameters

Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.