seurat_heat_highlight: Highlight parts of a heatmap
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Description Usage Arguments Value

Same as seurat_heat except that a selected part of the data is shown at a larger scale and the remainder a smaller scale

seurat_heat_highlight(
  x,
  select_cells,
  color_row,
  group.by,
  assay = "RNA",
  slot_data = "data",
  average = F,
  return_sep = F,
  row_scale = F,
  column_scale = F,
  color_scale = NULL,
  center_scale = T,
  show_quantile = 0.05,
  AP = NULL,
  seurat_heat_params = list()
)

`x`	a Seurat object
`select_cells`	a logical vector specifying which part of `x` to magnify
`average`	average the expression across non highlighted cell types
`return_sep`	whether the highlighted or unhighlighted heatmaps will be returned as a list (TRUE) or as a ComplexHeatmapList (FALSE).
`row_scale`	whether to perform row scaling
`color_scale`	the scale of color gradient for heatmap. By default, the `heatmap_color` field of the list supplied to `AP` should define the color for min, middle and max of the dataset. Otherwise, please input a function created by `circlize::colorRamp2`
`center_scale`	whether to put white colors half way between the min and max of the matrix. Otherwise, white color is placed at value 0.
`show_quantile`	if supplied, then the color gradient would not extend over the entire range of the matrix. The default 0.05 means that color gradient would extend from 5% to 95% percentile. This is to avoid outliers skewing the dynamic range of colors.
`AP`	a list of aesthetic parameters. The important fields include `cell_order` for ordering group labels, `gfont_fam`, `fontsize` and `heatmap_color`
`seurat_heat_params`	a named list with names being the arguments to `seurat_heat`. Each item must only be a vector or list with length 1 or 2. If the length is 2, then the first value will be for the first (unhighlighted heatmap). The second will be for the highlighted heatmap.