NEWS.md
In ababaian/palmid: Viral RNA Dependent RNA Polymerase Analysis Suite
palmid 0.0.4
Features
- Added Text Summary to the palmid Report
- Added 'nickname' mnemonics for each viral sOTU
- Added SRA-STAT taxonomy analysis
Bug Fixes
- Fixed
qlen bug misreporting from palmscan with long sequences
palmid 0.0.3
- Initial release.
palmid is a containerized analysis suite and R-package for the classification of viral RNA-dependent RNA Polymerases (RdRP) based on the palmprint sub-domain and the RNA viral palmprint database palmdb.
Features
- Reading of
palmscan and palmDB/DIAMOND-based alignment output files.
- Automated access to the Serratus SQL-server and cross-database analysis of input sequences.
- Taxonomic inference of input viral sequencing based on RdRP protein identity.
- Geospatial and temporal analysis of virus-sequence matches.
- Virus-associated host organism analysis of the Sequence Read Archive.
- Containerized work environment for reproducible deployment.
ababaian/palmid documentation built on July 1, 2023, 1:09 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
palmid 0.0.4
Features
- Added Text Summary to the palmid Report
- Added 'nickname' mnemonics for each viral sOTU
- Added SRA-STAT taxonomy analysis
Bug Fixes
- Fixed
qlenbug misreporting from palmscan with long sequences
palmid 0.0.3
- Initial release.
palmidis a containerized analysis suite and R-package for the classification of viral RNA-dependent RNA Polymerases (RdRP) based on the palmprint sub-domain and the RNA viral palmprint databasepalmdb.
Features
- Reading of
palmscanandpalmDB/DIAMOND-based alignment output files. - Automated access to the Serratus SQL-server and cross-database analysis of input sequences.
- Taxonomic inference of input viral sequencing based on RdRP protein identity.
- Geospatial and temporal analysis of virus-sequence matches.
- Virus-associated host organism analysis of the Sequence Read Archive.
- Containerized work environment for reproducible deployment.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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