Files in aeolianine/CRCsubtyping
Subtyping Colorectal Expression Data
CRCsubtyping.Rproj
DESCRIPTION
LICENSE.md
NAMESPACE
R/data.R
R/get_data.R
R/load_signatures.R
R/normalize.R
R/plot_tools.R
R/subtyping_tools_CMS.R
data/inmf_signatures_entrez.rda
data/inmf_signatures_sym.rda
data/sadanandam_786_genes.rda
inst/extdata/12920_2012_343_MOESM2_ESM_entrez.txt
inst/extdata/12920_2012_343_MOESM3_ESM_entrez.txt
inst/extdata/12920_2012_343_MOESM4_ESM_entrez.txt
inst/extdata/12920_2012_343_MOESM5_ESM_entrez.txt
inst/extdata/12920_2012_343_MOESM6_ESM_entrez.txt
inst/extdata/12920_2012_343_MOESM7_ESM_entrez.txt
inst/extdata/12920_2012_343_MOESM8_ESM_entrez.txt
inst/extdata/Sadanandam786genes.csv
inst/extdata/inmf_signatures_sym.rdata
inst/extdata/process.R
man/CMScolors.Rd
man/combat_to_ref.Rd
man/compare_RF_to_SSP.Rd
man/compare_to_training_labels.Rd
man/entrez2symbol.Rd
man/get_GSE33113_synapse.Rd
man/get_TCGA_synapse.Rd
man/get_synapse_table.Rd
man/inmf_signatures_entrez.Rd
man/inmf_signatures_sym.Rd
man/intersect_signature.Rd
man/load_CMS_genes.Rd
man/load_sadanandam_signature.Rd
man/load_schlicker_signature.Rd
man/plotSadanandamSubtypeCentroids.Rd
man/plotSubtypesCMS.RF.Rd
man/plotSubtypesCMS.SSP.Rd
man/plot_mCombat_effect.Rd
man/sadanandam_786_genes.Rd
man/subtypeCMS.RF.Rd
man/subtypeCMS.SSP.Rd
man/symbol2entrez.Rd
tests/testthat.R
tests/testthat/test_get_data.R
tests/testthat/test_load_signatures.R
tests/testthat/test_normalize.R
tests/testthat/test_plot_tools.R
tests/testthat/test_subtyping_tools_CMS.R
