calc_dcorr_GC_content_counts: calc_dcorr_GC_content_counts
In alex-kalinka-cruk/fgcQC: QC metric calculations for CRISPR screen data produced at the FGC
Description
Usage
Arguments
Value
Author(s)
References
View source: R/calc_dcorr_GC_content_counts.R
Description
Calculates the distance correlation between normalized counts and the GC content of sgRNAs in a given library.
Usage
1
calc_dcorr_GC_content_counts(counts, library)
Arguments
counts
A data frame of normalized counts for each sample in the study (samples as columns, gRNAs as rows).
library
A data frame containing the library file in which the first column gives the sgRNA sequence and the second column gives the sgRNA ID.
Value
A data frame with a 'SampleName' column and a 'distcorr_GC_content_counts' column.
Author(s)
Alex T. Kalinka, alex.kalinka@cancer.org.uk
References
Szekely, G.J., Rizzo, M.L., and Bakirov, N.K. (2007), Measuring and Testing Dependence by Correlation of Distances, Annals of Statistics, Vol. 35 No. 6, pp. 2769-2794.
alex-kalinka-cruk/fgcQC documentation built on June 23, 2020, 9:05 p.m.
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Description Usage Arguments Value Author(s) References
View source: R/calc_dcorr_GC_content_counts.R
Description
Calculates the distance correlation between normalized counts and the GC content of sgRNAs in a given library.
Usage
1 | calc_dcorr_GC_content_counts(counts, library)
|
Arguments
counts |
A data frame of normalized counts for each sample in the study (samples as columns, gRNAs as rows). |
library |
A data frame containing the library file in which the first column gives the sgRNA sequence and the second column gives the sgRNA ID. |
Value
A data frame with a 'SampleName' column and a 'distcorr_GC_content_counts' column.
Author(s)
Alex T. Kalinka, alex.kalinka@cancer.org.uk
References
Szekely, G.J., Rizzo, M.L., and Bakirov, N.K. (2007), Measuring and Testing Dependence by Correlation of Distances, Annals of Statistics, Vol. 35 No. 6, pp. 2769-2794.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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