calc_median_normalization_size_factors: calc_median_normalization_size_factors
In alex-kalinka-cruk/fgcQC: QC metric calculations for CRISPR screen data produced at the FGC
Description
Usage
Arguments
Value
Author(s)
View source: R/normalize_library_depth_median_ratio.R
Description
Calculates the size factors used in median normalization for count data: median of the geometric mean of counts across all experiments.
Usage
1
Arguments
counts
A data frame of counts for each sample in the study (samples as columns, gRNAs as rows).
Value
A data frame with 1 row and as many columns as 'counts' with size factors for each experiment.
Author(s)
Alex T. Kalinka, alex.kalinka@cancer.org.uk
alex-kalinka-cruk/fgcQC documentation built on June 23, 2020, 9:05 p.m.
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Description Usage Arguments Value Author(s)
View source: R/normalize_library_depth_median_ratio.R
Description
Calculates the size factors used in median normalization for count data: median of the geometric mean of counts across all experiments.
Usage
1 |
Arguments
counts |
A data frame of counts for each sample in the study (samples as columns, gRNAs as rows). |
Value
A data frame with 1 row and as many columns as 'counts' with size factors for each experiment.
Author(s)
Alex T. Kalinka, alex.kalinka@cancer.org.uk
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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