calc_percent_matching_gRNAs: calc_percent_matching_gRNAs
In alex-kalinka-cruk/fgcQC: QC metric calculations for CRISPR screen data produced at the FGC
Description
Usage
Arguments
Value
Author(s)
View source: R/calc_percent_matching_gRNAs.R
Description
Calculates the percentage of reads in each sample that can be assigned to any of the gRNA sequences.
Usage
1
calc_percent_matching_gRNAs(b2f_samples, counts)
Arguments
b2f_samples
A data frame of sample information derived from 'bcl2fastq2' output - see 'fgcQC::extract_b2f_json'. The 'SampleName' column should have been replaced with sample names hailing from the analysis config.
counts
A data frame of counts for each sample in the study (samples as columns, gRNAs as rows).
Value
A data frame containing per-sample percent matching gRNA values in a column called 'percent_reads_matching_gRNAs'.
Author(s)
Alex T. Kalinka, alex.kalinka@cancer.org.uk
alex-kalinka-cruk/fgcQC documentation built on June 23, 2020, 9:05 p.m.
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Description Usage Arguments Value Author(s)
View source: R/calc_percent_matching_gRNAs.R
Description
Calculates the percentage of reads in each sample that can be assigned to any of the gRNA sequences.
Usage
1 | calc_percent_matching_gRNAs(b2f_samples, counts)
|
Arguments
b2f_samples |
A data frame of sample information derived from 'bcl2fastq2' output - see 'fgcQC::extract_b2f_json'. The 'SampleName' column should have been replaced with sample names hailing from the analysis config. |
counts |
A data frame of counts for each sample in the study (samples as columns, gRNAs as rows). |
Value
A data frame containing per-sample percent matching gRNA values in a column called 'percent_reads_matching_gRNAs'.
Author(s)
Alex T. Kalinka, alex.kalinka@cancer.org.uk
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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