calc_replicate_logfc_corr: calc_replicate_logfc_corr
In alex-kalinka-cruk/fgcQC: QC metric calculations for CRISPR screen data produced at the FGC

Calculates logFC replicate Pearson correlations in accordance with recommendations by Hanna & Doench (2020).

1	calc_replicate_logfc_corr(logfc, suffix)

`logfc`	A data frame with columns 'log2FC.repl_1' and 'log2FC.repl_2'.
`suffix`	A character string naming the comparison: one of 'ctrl_plasmid' and 'treat_plasmid'.

A data frame with 'repl_log2FC_pearson_corr.<suffix>' columns.

Hanna, R. E. and Doench, J. G. 2020. Design and analysis of CRISPR-Cas experiments. Nature Biotechnology.

alex-kalinka-cruk/fgcQC documentation built on June 23, 2020, 9:05 p.m.

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