extract_proximal_4bases_PAM: extract_proximal_4bases_PAM
In alex-kalinka-cruk/fgcQC: QC metric calculations for CRISPR screen data produced at the FGC
Description
Usage
Arguments
Value
Author(s)
References
View source: R/extract_proximal_4bases_PAM.R
Description
Extracts the proximal 4 bases upstream of the PAM in a sgRNA library data frame into "GCC", "TT", or "Other" (Graf et al. 2019).
Usage
1
Arguments
library
A data frame containing the library file in which the first column gives the sgRNA sequence and the second column gives the sgRNA ID.
Value
A data frame with a column named 'proximal_4bases_pam'.
Author(s)
Alex T. Kalinka, alex.kalinka@cancer.org.uk
References
Graf, R. et al. (2019) sgRNA sequence motifs blocking efficient CRISPR/Cas9-mediated gene editing. Cell Rep 26: 1098-1103.
alex-kalinka-cruk/fgcQC documentation built on June 23, 2020, 9:05 p.m.
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Description Usage Arguments Value Author(s) References
View source: R/extract_proximal_4bases_PAM.R
Description
Extracts the proximal 4 bases upstream of the PAM in a sgRNA library data frame into "GCC", "TT", or "Other" (Graf et al. 2019).
Usage
1 |
Arguments
library |
A data frame containing the library file in which the first column gives the sgRNA sequence and the second column gives the sgRNA ID. |
Value
A data frame with a column named 'proximal_4bases_pam'.
Author(s)
Alex T. Kalinka, alex.kalinka@cancer.org.uk
References
Graf, R. et al. (2019) sgRNA sequence motifs blocking efficient CRISPR/Cas9-mediated gene editing. Cell Rep 26: 1098-1103.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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