alexvpickering/crossmeta: Cross Platform Meta-Analysis of Microarray Data
Implements cross-platform and cross-species meta-analyses of Affymentrix, Illumina, and Agilent microarray data. This package automates common tasks such as downloading, normalizing, and annotating raw GEO data. The user then selects control and treatment samples in order to perform differential expression analyses for all comparisons. After analysing each contrast seperately, the user can select tissue sources for each contrast and specify any tissue sources that should be grouped for the subsequent meta-analyses.
Getting started
Browse package contents
Package details |
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| Author | Alex Pickering |
| Bioconductor views | Annotation BatchEffect DifferentialExpression GUI GeneExpression Microarray OneChannel Preprocessing TissueMicroarray Transcription |
| Maintainer | Alex Pickering <alexvpickering@gmail.com> |
| License | MIT + file LICENSE |
| Version | 1.23.3 |
| URL | https://github.com/alexvpickering/crossmeta |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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