Files in alexvpickering/crossmeta

Cross Platform Meta-Analysis of Microarray Data

R/add_source.R R/data.R R/diff_expr.R R/diff_utils.R R/filter_genes.R R/get_vsd.R R/illum_headers.R R/load_affy.R R/load_agil.R R/load_illum.R R/load_utils.R R/meta_utils.R R/modules-contrasts-server.R R/modules-contrasts-ui.R R/run_select_contrasts.R R/setup_prev.R README.md data-raw/KEGG/kegg.R data-raw/entrezdt/entrezdt.R data-raw/homologene/homologene.R data-raw/sources/sources.R data-raw/species/org_package.R data-raw/species/org_taxid.R data-raw/sysdata.R inst/select_contrasts/global.R inst/select_contrasts/server.R inst/select_contrasts/ui.R man/addContrastInput.Rd man/add_adjusted.Rd man/add_sources.Rd man/add_vsd.Rd man/bulkAnnot.Rd man/bulkAnnotInput.Rd man/bulkForm.Rd man/bulkFormInput.Rd man/bulkPage.Rd man/bulkPageUI.Rd man/bulkTable.Rd man/bulkTableOuput.Rd man/ch2_subset.Rd man/clean_y.Rd man/delContrastsInput.Rd man/diff_expr.Rd man/es_meta.Rd man/exprs.MA.Rd man/filter_genes.Rd man/fit_ebayes.Rd man/fit_lm.Rd man/fix_illum_headers.Rd man/format_dl_annot.Rd man/format_up_annot.Rd man/get_ch2_mod.Rd man/get_group_levels.Rd man/get_palette.Rd man/get_raw.Rd man/get_sva_mods.Rd man/get_top_table.Rd man/get_vsd.Rd man/gs.names.Rd man/gslist.Rd man/ilmn.nnum.Rd man/iqr_replicates.Rd man/is_invertible.Rd man/load_agil_plat.Rd man/load_diff.Rd man/load_illum_plat.Rd man/load_plat.Rd man/load_raw.Rd man/makeExampleCountsEset.Rd man/match_prev_eset.Rd man/open_raw_illum.Rd man/phenoData.ch2.Rd man/prefix_illum_headers.Rd man/query_ref.Rd man/remove_autonamed.Rd man/run_limma.Rd man/run_limma_setup.Rd man/run_lmfit.Rd man/run_select_contrasts.Rd man/run_sva.Rd man/setup_prev.Rd man/symbol_annot.Rd man/to_eset.Rd man/to_ma.Rd man/validate_up_annot.Rd man/which_max_iqr.Rd man/xls_to_txt.Rd tests/testthat.R tests/testthat/test-all.R tests/testthat/test-diff_expr.R tests/testthat/test-match.R tests/testthat/test-two-channel.R tests/testthat/test-which_max_iqr.R vignettes/crossmeta-vignette.Rmd