API for altairwei/rhapsodykit
A Set of Tools for BD Rhapsody WTA Downstream Analysis
| Global functions | |
|---|---|
| %>% | Man page |
| .make_pseudo_bulk | Source code |
| aggregate_by_ident | Source code |
| barplot_cluster_abundance | Man page Source code |
| barplot_cluster_abundance.Seurat | Man page Source code |
| barplot_cluster_abundance.SingleCellExperiment | Man page Source code |
| barplot_cluster_abundance.data.frame | Man page Source code |
| calculateClusterProportion | Man page Source code |
| calculateClusterSize | Man page Source code |
| calculate_pseudo_bulk | Man page Source code |
| check_diff_state_results | Source code |
| diff_state_apply | Man page Source code |
| diff_state_filter | Man page Source code |
| diff_state_format | Man page Source code |
| diff_state_pull | Man page Source code |
| diff_state_ranked_lfc | Man page Source code |
| diff_state_significant | Man page Source code |
| diff_state_significant_lfc | Man page Source code |
| diff_state_subset | Man page Source code |
| diff_state_summary | Man page Source code |
| expr_freq_filter | Man page Source code |
| fetch_cellular_data | Man page Source code |
| fetch_cellular_data.character | Man page Source code |
| fetch_cellular_data.h5Seurat | Man page Source code |
| findDACombinedClusters | Man page Source code |
| findDiffAbundantCells | Man page Source code |
| findDiffAbundantMarkers | Man page Source code |
| find_all_avg_expr_genes | Man page Source code |
| find_all_conserved_markers | Man page Source code |
| find_all_diff_expr_genes | Man page Source code |
| find_file | Source code |
| find_group_marker_genes | Man page Source code |
| from_list_to_upset | Man page Source code |
| genecount_diff_state | Man page Source code |
| generate_seurat_plots | Man page Source code |
| gg_color_hue | Source code |
| heatmap_cross_sample | Man page Source code |
| heatmap_cross_sample.Seurat | Man page Source code |
| heatmap_cross_sample.SingleCellExperiment | Man page Source code |
| heatmap_cross_sample.array | Man page Source code |
| heatmap_cross_sample.list | Man page Source code |
| integrated_sample_analysis | Man page Source code |
| integration_analysis | Man page Source code |
| integration_anchorset | Man page Source code |
| intersection_counts | Man page Source code |
| key_mapping | Man page Source code |
| make_integrated_pseudo_bulk | Man page Source code |
| make_pseudo_bulk | Man page Source code |
| merge_analysis | Source code |
| merge_sample | Man page Source code |
| onlyDAscore | Man page Source code |
| perform_diff_gene | Man page Source code |
| perform_find_all_markers | Man page Source code |
| plotDACellLabel | Man page Source code |
| plotDACellScore | Man page Source code |
| plotDAEmbedding | Man page Source code |
| plotDAOverlap | Man page Source code |
| plotDARandomPermutation | Man page Source code |
| plotDASite | Man page Source code |
| plot_avg_expr_genes | Man page Source code |
| plot_axis_combmatrix | Source code |
| pluck_endswith | Source code |
| prepare_muscat_sce | Man page Source code |
| pseudobulk_diff_state | Man page Source code |
| read_expression_st | Man page Source code |
| read_molecules_csv | Man page Source code |
| read_mols_per_cell | Man page Source code |
| read_mtx | Man page Source code |
| read_rhapsody_wta | Man page Source code |
| read_unfiltered_csv | Man page Source code |
| reassign_sample | Man page Source code |
| save_expression_matrix | Man page Source code |
| save_plot | Man page Source code |
| save_png | Source code |
| save_to_disk | Man page Source code |
| save_to_disk.Seurat | Man page Source code |
| single_sample_analysis | Man page Source code |
| upset_dataframe | Man page Source code |
| upset_plot | Man page Source code |
| upset_updown_regulated | Man page Source code |
| volcano_diff_state | Man page Source code |
