consensus: Identify the consensus genotype call among a group of samples
In andrewparkermorgan/argyle: Basic interface and QC for genotypes from Illumina Infinium arrays
Description
Usage
Arguments
Details
Value
Description
Identify the consensus genotype call among a group of samples
Usage
1
Arguments
gty
a genotypes object
nas.allowed
maximum proportion of missing genotypes to ignore
...
ignored
Details
Define the "consensus" genotype to be the genotype with greatest frequency among a group
of samples, with ties broken in favor of the major allele. This function computes that consensus
ignoring missing values, and then masks sites with missingness greater than nas.allowed.
Value
a named vector of consensus genotypes, with length equal to number of rows in gty
andrewparkermorgan/argyle documentation built on May 10, 2019, 11:08 a.m.
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Description Usage Arguments Details Value
Description
Identify the consensus genotype call among a group of samples
Usage
1 |
Arguments
gty |
a |
nas.allowed |
maximum proportion of missing genotypes to ignore |
... |
ignored |
Details
Define the "consensus" genotype to be the genotype with greatest frequency among a group
of samples, with ties broken in favor of the major allele. This function computes that consensus
ignoring missing values, and then masks sites with missingness greater than nas.allowed.
Value
a named vector of consensus genotypes, with length equal to number of rows in gty
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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