Files in andrewparkermorgan/argyle
Basic interface and QC for genotypes from Illumina Infinium arrays
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/datasets.R
R/genetics.R
R/geno.R
R/hmm.R
R/io.R
R/normalize.R
R/package.R
R/pca.R
R/pheno.R
R/plink.R
R/plots.R
R/predict.R
R/qc.R
R/sex.R
R/themes.R
R/util.R
README.md
argyle_0.1.tar.gz
argyle_0.1.tgz
argyle_0.1.zip
data/ex.RData
data/wilds.RData
figs/argyle.png
inst/extdata/wild.chr19.bed
inst/extdata/wild.chr19.bim
inst/extdata/wild.chr19.fam
man/apply.filters.Rd
man/argyle.Rd
man/as.data.frame.genotypes.Rd
man/as.genotypes.Rd
man/as.rqtl.Rd
man/assoc.plink.Rd
man/autosomes.Rd
man/bafplot.Rd
man/blank.grob.Rd
man/cash-.genotypes.Rd
man/cbind.genotypes.Rd
man/consensus.Rd
man/dist.genotypes.Rd
man/dotplot.genotypes.Rd
man/drop.intensity.Rd
man/ex.Rd
man/export.doqtl.Rd
man/filter.plink.Rd
man/filters.genotypes.Rd
man/fix.strand.swaps.Rd
man/fixed.diffs.Rd
man/freq.Rd
man/freqplot.Rd
man/genoapply.Rd
man/genotypes.Rd
man/get.baf.Rd
man/get.call.Rd
man/get.intensity.Rd
man/ggmanhattan.Rd
man/guess.parents.Rd
man/has.intensity.Rd
man/head.genotypes.Rd
man/heatmap.genotypes.Rd
man/heterozygosity.Rd
man/informative.Rd
man/intensity.genotypes.Rd
man/intensity.vs.ref.Rd
man/intensityhist.Rd
man/is.filtered.Rd
man/kinship.plink.Rd
man/ld.plink.Rd
man/maf.Rd
man/markers.genotypes.Rd
man/mds.plink.Rd
man/mendel.distance.Rd
man/merge.genotypes.Rd
man/missingness.Rd
man/nmiss.Rd
man/oneway.Rd
man/oneway.plot.Rd
man/pca.genotypes.Rd
man/pca.plink.Rd
man/plinkify.Rd
man/plot.clusters.Rd
man/plot.haplotypes.Rd
man/plot.pca.result.Rd
man/predict.f1.Rd
man/predict.haplogroup.Rd
man/predict.sex.Rd
man/prop.het.Rd
man/prune.plink.Rd
man/qcplot.Rd
man/quantile.normalize.Rd
man/rbind.genotypes.Rd
man/read.beadstudio.Rd
man/read.plink.Rd
man/recode.genotypes.Rd
man/recode.to.parent.Rd
man/reconstruct.haps.Rd
man/replace.map.Rd
man/replace.names.Rd
man/run.marker.qc.Rd
man/run.sample.qc.Rd
man/samples.genotypes.Rd
man/scale_fill_heatmap.Rd
man/scale_x_genome.Rd
man/scale_y_logp.Rd
man/segregating.Rd
man/sex.genotypes.Rd
man/sextable.Rd
man/sexysum.Rd
man/sub-.genotypes.Rd
man/subset.genotypes.Rd
man/summarize.calls.Rd
man/summarize.filters.Rd
man/summarize.intensity.Rd
man/tQN.Rd
man/tdt.plink.Rd
man/theme_axesonly.Rd
man/theme_gbrowse.Rd
man/theme_heatmap.Rd
man/theme_nothing.Rd
man/thin.genotypes.Rd
man/twoway.Rd
man/twoway.plot.Rd
man/validate.genotypes.Rd
man/weir.fst.plink.Rd
man/write.hgdp.Rd
man/write.plink.Rd
man/xchrom.Rd
man/ychrom.Rd
src/RcppExports.cpp
src/dist.cpp
src/tQN.cpp
vignettes/argyle.Rmd
vignettes/argyle.pdf
vignettes/g3.csl
vignettes/refs.bib
