oneway: Get one-way marker-phenotype association
In andrewparkermorgan/argyle: Basic interface and QC for genotypes from Illumina Infinium arrays
Description
Usage
Arguments
Details
Value
Description
Get one-way marker-phenotype association
Usage
1
Arguments
gty
a genotypes object
marker
indexing vector into gty: can be logical, character or numeric
verbose
logical; if TRUE, preview the contingency table on the console
...
ignored
Details
To facilitate plotting downstream, the function tries to guess if the phenotype is binary
(assuming the PLINK convention of 1=control/2=case), ordinal/categorical, or continuous.
Categorical phenotypes will be converted to a factor.
Value
a dataframe with marker metadata, genotype calls, and sample metadata including phenotype
andrewparkermorgan/argyle documentation built on May 10, 2019, 11:08 a.m.
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Description Usage Arguments Details Value
Description
Get one-way marker-phenotype association
Usage
1 |
Arguments
gty |
a |
marker |
indexing vector into |
verbose |
logical; if |
... |
ignored |
Details
To facilitate plotting downstream, the function tries to guess if the phenotype is binary
(assuming the PLINK convention of 1=control/2=case), ordinal/categorical, or continuous.
Categorical phenotypes will be converted to a factor.
Value
a dataframe with marker metadata, genotype calls, and sample metadata including phenotype
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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