heatmap.genotypes: Plot a heatmap representing genetic distances between samples
In andrewparkermorgan/argyle: Basic interface and QC for genotypes from Illumina Infinium arrays
Description
Usage
Arguments
Details
Value
Description
Plot a heatmap representing genetic distances between samples
Usage
1
2
Arguments
gty
a genotypes object
d
a distance matrix (of class dist), to avoid re-computing
...
ignored
Details
Computation of pairwise distances in a large set of samples will be somewhat expensive,
so there is advantage to pre-computing this matrix (using argyle::dist()) if it may
be useful in other analyses.
Value
a (hierarchically-clustered) matrix representation of pairwise genetic distances between
samples, normalized to [0,1].
andrewparkermorgan/argyle documentation built on May 10, 2019, 11:08 a.m.
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Description Usage Arguments Details Value
Description
Plot a heatmap representing genetic distances between samples
Usage
1 2 |
Arguments
gty |
a |
d |
a distance matrix (of class |
... |
ignored |
Details
Computation of pairwise distances in a large set of samples will be somewhat expensive,
so there is advantage to pre-computing this matrix (using argyle::dist()) if it may
be useful in other analyses.
Value
a (hierarchically-clustered) matrix representation of pairwise genetic distances between samples, normalized to [0,1].
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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