freqplot: Plot frequencies of missing, heterozygous, and minor-allele...
In andrewparkermorgan/argyle: Basic interface and QC for genotypes from Illumina Infinium arrays
Description
Usage
Arguments
Value
See Also
Description
Plot frequencies of missing, heterozygous, and minor-allele calls across genome
Usage
1
Arguments
gty
a genotypes object
max.H
show markers with heterozygosity greater than this threshold
max.N
show markers with missingness greater than this threshold
min.maf
show markers with minor-allele frequency less than this threshold
...
ignored
Value
a ggplot object with a Manhattan-style plot of the above values
See Also
qcplot, bafplot, summarize.calls
andrewparkermorgan/argyle documentation built on May 10, 2019, 11:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also
Description
Plot frequencies of missing, heterozygous, and minor-allele calls across genome
Usage
1 |
Arguments
gty |
a |
max.H |
show markers with heterozygosity greater than this threshold |
max.N |
show markers with missingness greater than this threshold |
min.maf |
show markers with minor-allele frequency less than this threshold |
... |
ignored |
Value
a ggplot object with a Manhattan-style plot of the above values
See Also
qcplot, bafplot, summarize.calls
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.