fix.strand.swaps: Fix alleles in marker map using those in observed genotypes
In andrewparkermorgan/argyle: Basic interface and QC for genotypes from Illumina Infinium arrays
Description
Usage
Arguments
Details
Value
Description
Fix alleles in marker map using those in observed genotypes
Usage
1
fix.strand.swaps(gty, ...)
Arguments
gty
a genotypes object
Details
Because this method relies on information in observed genotypes, it is advisable
to use it only with "many" samples, where "many" is enough to capture all alleles of interest.
Value
A new genotypes object with corrected alleles, whose marker map has two
additional columns: swapped indicates if alleles were swapped, and unresolved
indicates that observed and expected alleles don't match, but can't be reconciled with
a simple strand swap.
andrewparkermorgan/argyle documentation built on May 10, 2019, 11:08 a.m.
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Description Usage Arguments Details Value
Description
Fix alleles in marker map using those in observed genotypes
Usage
1 | fix.strand.swaps(gty, ...)
|
Arguments
gty |
a |
Details
Because this method relies on information in observed genotypes, it is advisable to use it only with "many" samples, where "many" is enough to capture all alleles of interest.
Value
A new genotypes object with corrected alleles, whose marker map has two
additional columns: swapped indicates if alleles were swapped, and unresolved
indicates that observed and expected alleles don't match, but can't be reconciled with
a simple strand swap.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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